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Feat/giang test #283

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Description about what this pull request does.

Please make sure to follow the DEV guidelines before asking for review.

New Features

  • Implemented XXX

Breaking Changes

Bug Fixes

Improvements

Dependency updates

Deployment changes

@PlanXCyborg
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Jenkins Build 1 : time taken 1 hr 7 min
Check the https://jenkins.planx-pla.net/job/perf-sheepdog/job/PR-283/1/display/redirect

Test results:
Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @performance: Export all nodes of type: aliquot 0.244 0.35 -0.11
@ExportPerformanceTests @performance: Export all nodes of type: experiment 0.327 0.974 -0.65
@ExportPerformanceTests @performance: Export all nodes of type: program 0.054 0.061 -0.01
@ExportPerformanceTests @performance: Export all nodes of type: project 0.082 0.059 0.02
@ExportPerformanceTests @performance: Export all nodes of type: read_group_qc 0.109 0.092 0.02
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: aliquot 0.348 0.169 0.18
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: case 0.349 0.271 0.08
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: read_group_qc 0.083 0.069 0.01
@QueryPerformanceTests @performance: Executing bottomUp query # 1 0.606 0.528 0.08
@QueryPerformanceTests @performance: Executing bottomUp query # 2 0.533 0.506 0.03
@QueryPerformanceTests @performance: Executing bottomUp query # 4 0.309 0.358 -0.05
@QueryPerformanceTests @performance: Executing bottomUp query # 6 0.138 0.152 -0.01
@QueryPerformanceTests @performance: Executing bottomUp query # 7 0.092 0.064 0.03
@QueryPerformanceTests @performance: Executing topDown query # 0 0.057 0.05 0.01
@QueryPerformanceTests @performance: Executing topDown query # 1 0.07 0.074 -0.00
@QueryPerformanceTests @performance: Executing topDown query # 2 0.096 0.106 -0.01
@QueryPerformanceTests @performance: Executing topDown query # 4 0.395 0.251 0.14
@QueryPerformanceTests @performance: Executing topDown query # 5 0.351 0.329 0.02
@QueryPerformanceTests @performance: Executing topDown query # 7 0.545 0.516 0.03
@SubmissionPerformanceTests @performance: Submission acknowledgement 10 0.338 0.525 -0.19
@SubmissionPerformanceTests @performance: Submission acknowledgement 100 2.906 2.38 0.53
@SubmissionPerformanceTests @performance: Submission aligned_reads_index 10 2.094 2.374 -0.28
@SubmissionPerformanceTests @performance: Submission aligned_reads_index 100 17.669 20.273 -2.60
@SubmissionPerformanceTests @performance: Submission aliquot 10 0.376 0.499 -0.12
@SubmissionPerformanceTests @performance: Submission case 1000 28.259 26.244 2.02
@SubmissionPerformanceTests @performance: Submission clinical_test 10 0.629 0.688 -0.06
@SubmissionPerformanceTests @performance: Submission core_metadata_collection 10 1.041 1.148 -0.11
@SubmissionPerformanceTests @performance: Submission core_metadata_collection 100 2.83 2.476 0.35
@SubmissionPerformanceTests @performance: Submission diagnosis 10 0.444 0.564 -0.12
@SubmissionPerformanceTests @performance: Submission diagnosis 1000 29.517 27.36 2.16
@SubmissionPerformanceTests @performance: Submission experiment 10 0.474 0.413 0.06
@SubmissionPerformanceTests @performance: Submission experiment 100 2.723 2.909 -0.19
@SubmissionPerformanceTests @performance: Submission experimental_metadata 100 17.394 21.886 -4.49
@SubmissionPerformanceTests @performance: Submission exposure 100 2.499 3.586 -1.09
@SubmissionPerformanceTests @performance: Submission exposure 1000 25.026 21.978 3.05
@SubmissionPerformanceTests @performance: Submission family_history 100 2.661 2.969 -0.31
@SubmissionPerformanceTests @performance: Submission keyword 10 0.368 0.436 -0.07
@SubmissionPerformanceTests @performance: Submission keyword 100 2.551 2.814 -0.26
@SubmissionPerformanceTests @performance: Submission keyword 1000 22.554 21.073 1.48
@SubmissionPerformanceTests @performance: Submission publication 100 2.387 2.569 -0.18
@SubmissionPerformanceTests @performance: Submission read_group 10 0.524 0.422 0.10
@SubmissionPerformanceTests @performance: Submission read_group 1000 25.855 28.596 -2.74
@SubmissionPerformanceTests @performance: Submission read_group_qc 10 0.776 0.589 0.19
@SubmissionPerformanceTests @performance: Submission read_group_qc 100 5.023 4.742 0.28
@SubmissionPerformanceTests @performance: Submission sample 10 0.583 0.518 0.06
@SubmissionPerformanceTests @performance: Submission sample 100 2.908 5.427 -2.52
@SubmissionPerformanceTests @performance: Submission slide 10 0.384 0.502 -0.12
@SubmissionPerformanceTests @performance: Submission slide 100 2.517 3.075 -0.56
@SubmissionPerformanceTests @performance: Submission slide_image 10 1.892 3.567 -1.67
@SubmissionPerformanceTests @performance: Submission slide_image 100 17.717 20.245 -2.53
@SubmissionPerformanceTests @performance: Submission submitted_aligned_reads 10 2.265 5.249 -2.98
@SubmissionPerformanceTests @performance: Submission submitted_aligned_reads 100 19.661 23.951 -4.29
@SubmissionPerformanceTests @performance: Submission submitted_copy_number 10 1.923 3.025 -1.10
@SubmissionPerformanceTests @performance: Submission submitted_copy_number 100 17.09 37.58 -20.49
@SubmissionPerformanceTests @performance: Submission submitted_methylation 10 1.975 2.316 -0.34
@SubmissionPerformanceTests @performance: Submission submitted_methylation 100 18.049 27.52 -9.47
@SubmissionPerformanceTests @performance: Submission submitted_somatic_mutation 10 2.872 2.52 0.35
@SubmissionPerformanceTests @performance: Submission submitted_somatic_mutation 100 17.213 25.168 -7.95
@SubmissionPerformanceTests @performance: Submission submitted_unaligned_reads 100 17.956 22.983 -5.03
@SubmissionPerformanceTests @performance: Submission treatment 10 0.379 0.468 -0.09
@SubmissionPerformanceTests @performance: Submission treatment 1000 24.925 22.069 2.86

@PlanXCyborg
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Jenkins Build 2 : time taken 45 min
Check the https://jenkins.planx-pla.net/job/perf-sheepdog/job/PR-283/2/display/redirect

Test results:
Passed: 109, Failed: 0, Skipped: 0

Test Time (PR) Time (master) Diff
@ExportPerformanceTests @performance: Export all nodes of type: aliquot 0.241 0.35 -0.11
@ExportPerformanceTests @performance: Export all nodes of type: case 0.199 0.243 -0.04
@ExportPerformanceTests @performance: Export all nodes of type: experiment 0.285 0.974 -0.69
@ExportPerformanceTests @performance: Export all nodes of type: program 0.054 0.061 -0.01
@ExportPerformanceTests @performance: Export all nodes of type: project 0.053 0.059 -0.01
@ExportPerformanceTests @performance: Export all nodes of type: read_group 0.488 0.417 0.07
@ExportPerformanceTests @performance: Export all nodes of type: read_group_qc 0.085 0.092 -0.01
@ExportPerformanceTests @performance: Export all nodes of type: sample 0.375 0.407 -0.03
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: aliquot 0.146 0.169 -0.02
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: case 0.211 0.271 -0.06
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: experiment 0.192 0.267 -0.07
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: read_group 0.069 0.075 -0.01
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: read_group_qc 0.063 0.069 -0.01
@ExportPerformanceTests @performance: Exporting a record by ID on nodes of type: sample 0.086 0.116 -0.03
@QueryPerformanceTests @performance: Executing bottomUp query # 0 0.652 0.572 0.08
@QueryPerformanceTests @performance: Executing bottomUp query # 1 0.565 0.528 0.04
@QueryPerformanceTests @performance: Executing bottomUp query # 4 0.312 0.358 -0.05
@QueryPerformanceTests @performance: Executing bottomUp query # 5 0.259 0.238 0.02
@QueryPerformanceTests @performance: Executing bottomUp query # 6 0.137 0.152 -0.02
@QueryPerformanceTests @performance: Executing topDown query # 0 0.044 0.05 -0.01
@QueryPerformanceTests @performance: Executing topDown query # 1 0.064 0.074 -0.01
@QueryPerformanceTests @performance: Executing topDown query # 2 0.087 0.106 -0.02
@QueryPerformanceTests @performance: Executing topDown query # 4 0.413 0.251 0.16
@SubmissionPerformanceTests @performance: Submission acknowledgement 10 0.305 0.525 -0.22
@SubmissionPerformanceTests @performance: Submission acknowledgement 100 1.842 2.38 -0.54
@SubmissionPerformanceTests @performance: Submission acknowledgement 1000 18.773 25.203 -6.43
@SubmissionPerformanceTests @performance: Submission aligned_reads_index 10 1.878 2.374 -0.50
@SubmissionPerformanceTests @performance: Submission aligned_reads_index 100 18.625 20.273 -1.65
@SubmissionPerformanceTests @performance: Submission aliquot 10 0.315 0.499 -0.18
@SubmissionPerformanceTests @performance: Submission aliquot 100 1.871 2.454 -0.58
@SubmissionPerformanceTests @performance: Submission aliquot 1000 19.788 26.362 -6.57
@SubmissionPerformanceTests @performance: Submission case 10 0.29 0.367 -0.08
@SubmissionPerformanceTests @performance: Submission case 100 1.882 2.69 -0.81
@SubmissionPerformanceTests @performance: Submission case 1000 18.223 26.244 -8.02
@SubmissionPerformanceTests @performance: Submission clinical_test 10 0.321 0.688 -0.37
@SubmissionPerformanceTests @performance: Submission clinical_test 100 2.241 2.608 -0.37
@SubmissionPerformanceTests @performance: Submission clinical_test 1000 21.268 29.099 -7.83
@SubmissionPerformanceTests @performance: Submission core_metadata_collection 10 1.315 1.148 0.17
@SubmissionPerformanceTests @performance: Submission core_metadata_collection 100 1.93 2.476 -0.55
@SubmissionPerformanceTests @performance: Submission core_metadata_collection 1000 19.365 26.493 -7.13
@SubmissionPerformanceTests @performance: Submission demographic 10 0.307 0.388 -0.08
@SubmissionPerformanceTests @performance: Submission demographic 100 2.23 2.87 -0.64
@SubmissionPerformanceTests @performance: Submission demographic 1000 21.599 29.346 -7.75
@SubmissionPerformanceTests @performance: Submission diagnosis 10 0.327 0.564 -0.24
@SubmissionPerformanceTests @performance: Submission diagnosis 100 2.401 2.96 -0.56
@SubmissionPerformanceTests @performance: Submission diagnosis 1000 22.271 27.36 -5.09
@SubmissionPerformanceTests @performance: Submission experiment 10 0.382 0.413 -0.03
@SubmissionPerformanceTests @performance: Submission experiment 100 1.937 2.909 -0.97
@SubmissionPerformanceTests @performance: Submission experiment 1000 19.046 28.07 -9.02
@SubmissionPerformanceTests @performance: Submission experimental_metadata 10 1.874 2.071 -0.20
@SubmissionPerformanceTests @performance: Submission experimental_metadata 100 19.125 21.886 -2.76
@SubmissionPerformanceTests @performance: Submission exposure 10 0.299 0.372 -0.07
@SubmissionPerformanceTests @performance: Submission exposure 100 1.929 3.586 -1.66
@SubmissionPerformanceTests @performance: Submission exposure 1000 19.218 21.978 -2.76
@SubmissionPerformanceTests @performance: Submission family_history 10 0.311 0.395 -0.08
@SubmissionPerformanceTests @performance: Submission family_history 100 1.839 2.969 -1.13
@SubmissionPerformanceTests @performance: Submission family_history 1000 19.031 25.712 -6.68
@SubmissionPerformanceTests @performance: Submission keyword 10 0.3 0.436 -0.14
@SubmissionPerformanceTests @performance: Submission keyword 100 1.791 2.814 -1.02
@SubmissionPerformanceTests @performance: Submission keyword 1000 18.935 21.073 -2.14
@SubmissionPerformanceTests @performance: Submission publication 10 0.29 0.368 -0.08
@SubmissionPerformanceTests @performance: Submission publication 100 1.732 2.569 -0.84
@SubmissionPerformanceTests @performance: Submission publication 1000 18.319 23.4 -5.08
@SubmissionPerformanceTests @performance: Submission read_group 10 0.327 0.422 -0.09
@SubmissionPerformanceTests @performance: Submission read_group 100 2.057 2.754 -0.70
@SubmissionPerformanceTests @performance: Submission read_group 1000 21.173 28.596 -7.42
@SubmissionPerformanceTests @performance: Submission read_group_qc 10 0.431 0.589 -0.16
@SubmissionPerformanceTests @performance: Submission read_group_qc 100 3.347 4.742 -1.40
@SubmissionPerformanceTests @performance: Submission read_group_qc 1000 22.705 29.114 -6.41
@SubmissionPerformanceTests @performance: Submission sample 10 1.956 0.518 1.44
@SubmissionPerformanceTests @performance: Submission sample 100 2.099 5.427 -3.33
@SubmissionPerformanceTests @performance: Submission sample 1000 21.64 27.627 -5.99
@SubmissionPerformanceTests @performance: Submission slide 10 0.337 0.502 -0.16
@SubmissionPerformanceTests @performance: Submission slide 100 2.099 3.075 -0.98
@SubmissionPerformanceTests @performance: Submission slide 1000 19.836 27.926 -8.09
@SubmissionPerformanceTests @performance: Submission slide_count 10 0.278 0.437 -0.16
@SubmissionPerformanceTests @performance: Submission slide_count 100 2.006 2.584 -0.58
@SubmissionPerformanceTests @performance: Submission slide_count 1000 19.194 25.394 -6.20
@SubmissionPerformanceTests @performance: Submission slide_image 10 1.909 3.567 -1.66
@SubmissionPerformanceTests @performance: Submission slide_image 100 18.722 20.245 -1.52
@SubmissionPerformanceTests @performance: Submission submitted_aligned_reads 10 1.898 5.249 -3.35
@SubmissionPerformanceTests @performance: Submission submitted_aligned_reads 100 18.278 23.951 -5.67
@SubmissionPerformanceTests @performance: Submission submitted_copy_number 10 2.052 3.025 -0.97
@SubmissionPerformanceTests @performance: Submission submitted_copy_number 100 20.01 37.58 -17.57
@SubmissionPerformanceTests @performance: Submission submitted_methylation 10 1.915 2.316 -0.40
@SubmissionPerformanceTests @performance: Submission submitted_methylation 100 17.995 27.52 -9.52
@SubmissionPerformanceTests @performance: Submission submitted_somatic_mutation 10 1.88 2.52 -0.64
@SubmissionPerformanceTests @performance: Submission submitted_somatic_mutation 100 20.143 25.168 -5.02
@SubmissionPerformanceTests @performance: Submission submitted_unaligned_reads 10 1.883 2.22 -0.34
@SubmissionPerformanceTests @performance: Submission submitted_unaligned_reads 100 18.294 22.983 -4.69
@SubmissionPerformanceTests @performance: Submission treatment 10 0.357 0.468 -0.11
@SubmissionPerformanceTests @performance: Submission treatment 100 1.906 2.931 -1.02
@SubmissionPerformanceTests @performance: Submission treatment 1000 18.658 22.069 -3.41

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@giangbui @PlanXCyborg